If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ), 'gf_id' => 'HOM05D000901', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000901' ), 'data_identifier' => 'HOM05D000901', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000901', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '665', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20390' => 'bna', 'A03p35020' => 'bna', 'A06p16330' => 'bna', 'A06p16340' => 'bna', 'A07p15880' => 'bna', 'A07p28620' => 'bna', 'A07p41510' => 'bna', 'A08p29450' => 'bna', 'Aa31LG4G6150' => 'aar', 'Aa31LG7G4610' => 'aar', 'Aa31LG7G4620' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1931' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.357' => 'aag', 'Actinidia04414' => 'ach', 'Actinidia09493' => 'ach', 'Actinidia15456' => 'ach', 'Actinidia17013' => 'ach', 'Actinidia29540' => 'ach', 'Actinidia29763' => 'ach', 'Actinidia30089' => 'ach', 'Actinidia37582' => 'ach', 'Actinidia37945' => 'ach', 'Actinidia37946' => 'ach', 'Ah.00g000720' => 'amhyb', 'Ah.00g000730' => 'amhyb', 'Ah.08g214040' => 'amhyb', 'AL1G33060' => 'aly', 'AL1G33070' => 'aly', 'AL2G36030' => 'aly', 'AL2G36040' => 'aly', 'AL3G18250' => 'aly', 'Aqoxy2G03770' => 'aox', 'Aqoxy5G01833' => 'aox', 'Aqoxy5G02051' => 'aox', 'Aqoxy5G02424' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0DG4WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37PP3X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774XMB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GH6QG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FKE2VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTSZ1P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K685T3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX768G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7N2VM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWY9RW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU9ZRS' => 'arhy', 'AT1G20220' => 'ath', 'AT1G20225' => 'ath', 'AT1G76010' => 'ath', 'AT1G76020' => 'ath', 'AT3G07030' => 'ath', 'ATR0584G126' => 'atr', 'ATR0661G262' => 'atr', 'ATR0736G228' => 'atr', 'Atru.chr13.2065' => 'acertr', 'Atru.chr13.233' => 'acertr', 'Atru.chr4.662' => 'acertr', 'Atru.chr5.2010' => 'acertr', 'Atru.chr6.1009' => 'acertr', 'AUR62003638' => 'cqu', 'AUR62013896' => 'cqu', 'AUR62013897' => 'cqu', 'AUR62017948' => 'cqu', 'AUR62031832' => 'cqu', 'AUR62036697' => 'cqu', 'AUR62036698' => 'cqu', 'AUR62036699' => 'cqu', 'BcaB02g07053' => 'bca', 'BcaB03g12875' => 'bca', 'BcaB03g14327' => 'bca', 'BcaB05g24967' => 'bca', 'BcaB07g32030' => 'bca', 'BcaC01g02788' => 'bca', 'BcaC03g15639' => 'bca', 'BcaC03g15640' => 'bca', 'BcaC05g25925' => 'bca', 'BcaC07g39027' => 'bca', 'BcaC08g45543' => 'bca', 'BcaC08g47093' => 'bca', 'BcaC08g47306' => 'bca', 'BcaC08g47307' => 'bca', 'BcaC09g50962' => 'bca', 'BcaC09g50963' => 'bca', 'BolC1t01801H' => 'bol', 'BolC2t09354H' => 'bol', 'BolC3t16530H' => 'bol', 'BolC3t18302H' => 'bol', 'BolC3t21388H' => 'bol', 'BolC5t30581H' => 'bol', 'BolC5t30582H' => 'bol', 'BolC6t37476H' => 'bol', 'BolC6t40030H' => 'bol', 'BolC6t40031H' => 'bol', 'BolC7t42853H' => 'bol', 'BolC8t49638H' => 'bol', 'BraA02t07071Z' => 'bra', 'BraA03t12682Z' => 'bra', 'BraA06t24737Z' => 'bra', 'BraA06t24738Z' => 'bra', 'BraA07t29319Z' => 'bra', 'BraA07t30503Z' => 'bra', 'BraA07t31683Z' => 'bra', 'BraA08t34881Z' => 'bra', 'C02p33510' => 'bna', 'C03p42600' => 'bna', 'C03p50790' => 'bna', 'C03p60410' => 'bna', 'C05p18760' => 'bna', 'C05p18770' => 'bna', 'C06p32230' => 'bna', 'C06p49920' => 'bna', 'C07p15010' => 'bna', 'C07p15020' => 'bna', 'C07p23170' => 'bna', 'C08p20030' => 'bna', 'CAN.G1517.1' => 'can', 'CAN.G264.9' => 'can', 'CAN.G311.61' => 'can', 'CAN.G500.64' => 'can', 'CAN.G771.61' => 'can', 'CANSAT01G2093' => 'cansat', 'CANSAT25G0446' => 'cansat', 'CANSAT25G0793' => 'cansat', 'CANSAT25G3182' => 'cansat', 'CARHR020710' => 'chi', 'CARHR020720' => 'chi', 'CARHR069540' => 'chi', 'CARHR069550' => 'chi', 'CARHR081620' => 'chi', 'Carub.0001s1974' => 'cru', 'Carub.0001s1975' => 'cru', 'Carub.0002s2289' => 'cru', 'Carub.0002s2290' => 'cru', 'Carub.0003s0655' => 'cru', 'Ca_07537_v3' => 'car', 'Ca_07538_v3' => 'car', 'Ca_11598_v3' => 'car', 'CBR_g10910' => 'cbr', 'CBR_g49498' => 'cbr', 'Cc01_g17240' => 'ccan', 'Cc03_g07390' => 'ccan', 'Cc10_g01220' => 'ccan', 'Cc10_g01230' => 'ccan', 'CDE01G0746' => 'cde', 'CDE02G0132' => 'cde', 'CDE02G0977' => 'cde', 'CDE02G3279' => 'cde', 'CDE04G2416' => 'cde', 'CDE09G0289' => 'cde', 'Cfa000618' => 'cfa', 'Cfa002556' => 'cfa', 'Cfa013996' => 'cfa', 'Ciclev10002021m.g' => 'ccl', 'Ciclev10002227m.g' => 'ccl', 'Ciclev10002332m.g' => 'ccl', 'Ciclev10002668m.g' => 'ccl', 'Ciclev10021827m.g' => 'ccl', 'Ciclev10026333m.g' => 'ccl', 'Ciclev10027478m.g' => 'ccl', 'CiPaw.03G130800' => 'cil', 'CiPaw.03G151200' => 'cil', 'CiPaw.04G106600' => 'cil', 'CiPaw.07G144400' => 'cil', 'CiPaw.07G144500' => 'cil', 'CiPaw.07G144600' => 'cil', 'CiPaw.08G068900' => 'cil', 'CiPaw.15G014500' => 'cil', 'CiPaw.16G009900' => 'cil', 'ClCG01G015780' => 'cla', 'ClCG05G015480' => 'cla', 'ClCG07G001800' => 'cla', 'ClCG07G001840' => 'cla', 'ClCG08G014120' => 'cla', 'COL.COLO4_03021' => 'col', 'COL.COLO4_12279' => 'col', 'COL.COLO4_17903' => 'col', 'COL.COLO4_26098' => 'col', 'Cpa.g.sc2.32' => 'cpa', 'Cpa.g.sc26.277' => 'cpa', 'Cpa.g.sc26.278' => 'cpa', 'Cpa.g.sc49.100' => 'cpa', 'Cpa.g.sc8.174' => 'cpa', 'Cre09.g409500' => 'cre', 'CsaV3_2G024310' => 'csa', 'CsaV3_3G028780' => 'csa', 'CsaV3_3G028820' => 'csa', 'CsaV3_3G046070' => 'csa', 'CsaV3_6G042050' => 'csa', 'CSS0006831' => 'camsi', 'CSS0010771' => 'camsi', 'CSS0015004' => 'camsi', 'CSS0026058' => 'camsi', 'CSS0028640' => 'camsi', 'CSS0032017' => 'camsi', 'CSS0034042' => 'camsi', 'CSS0038105' => 'camsi', 'CSS0046185' => 'camsi', 'CSS0047191' => 'camsi', 'CSS0049889' => 'camsi', 'DCAR_004714' => 'dca', 'DCAR_012633' => 'dca', 'DCAR_013891' => 'dca', 'DCAR_013892' => 'dca', 'DCAR_016624' => 'dca', 'DCAR_018552' => 'dca', 'DCAR_025124' => 'dca', 'Dinv04665' => 'din', 'Dinv19217' => 'din', 'Dinv19444' => 'din', 'Dinv25884' => 'din', 'Dinv31885' => 'din', 'Dinv38262' => 'din', 'Dinv39552' => 'din', 'Dinv41055' => 'din', 'Duzib041G0373' => 'dzi', 'Duzib052G0878' => 'dzi', 'Duzib116G0085' => 'dzi', 'Duzib132G0106' => 'dzi', 'Duzib133G1154' => 'dzi', 'Duzib138G1339' => 'dzi', 'Duzib187G0979' => 'dzi', 'Duzib211G0515' => 'dzi', 'Duzib248G1066' => 'dzi', 'Duzib264G0057' => 'dzi', 'ECA233G4687' => 'eca', 'ECA238G3494' => 'eca', 'ECA238G4133' => 'eca', 'EL10Ac1g02116' => 'bvu', 'EL10Ac1g02118' => 'bvu', 'EL10Ac6g15236' => 'bvu', 'EL10Ac7g17789' => 'bvu', 'Eucgr.F01689' => 'egr', 'Eucgr.F01691' => 'egr', 'Eucgr.F03719' => 'egr', 'Eucgr.F03720' => 'egr', 'Eucgr.H00805' => 'egr', 'Eucgr.H01097' => 'egr', 'Eucgr.K03602' => 'egr', 'Eucgr.L01283' => 'egr', 'FAN15G2950' => 'fan', 'FAN15G3056' => 'fan', 'FAN15G3485' => 'fan', 'FAN19G1861' => 'fan', 'FAN20G1835' => 'fan', 'FAN20G2011' => 'fan', 'FAN20G3106' => 'fan', 'FAN23G0712' => 'fan', 'FAN24G1007' => 'fan', 'FAN24G2534' => 'fan', 'FAN27G0503' => 'fan', 'FAN27G1122' => 'fan', 'FAN27G1394' => 'fan', 'FAN28G2424' => 'fan', 'FvH4_1g23910' => 'fve', 'FvH4_2g13290' => 'fve', 'FvH4_2g19311' => 'fve', 'FvH4_2g38030' => 'fve', 'FvH4_2g38031' => 'fve', 'FvH4_6g37350' => 'fve', 'Glyma.04G021300' => 'gma', 'Glyma.04G021400' => 'gma', 'Glyma.04G217100' => 'gma', 'Glyma.06G148800' => 'gma', 'Glyma.08G356000' => 'gma', 'Glyma.14G221700' => 'gma', 'Glyma.17G260600' => 'gma', 'Glyma.18G173100' => 'gma', 'Gohir.A01G109300' => 'ghi', 'Gohir.A01G175400' => 'ghi', 'Gohir.A04G126600' => 'ghi', 'Gohir.A05G184000' => 'ghi', 'Gohir.A06G001500' => 'ghi', 'Gohir.A08G046700' => 'ghi', 'Gohir.A11G054400' => 'ghi', 'Gohir.A11G136400' => 'ghi', 'Gohir.A12G083400' => 'ghi', 'Gohir.D01G038600' => 'ghi', 'Gohir.D01G096100' => 'ghi', 'Gohir.D01G114625' => 'ghi', 'Gohir.D01G166400' => 'ghi', 'Gohir.D03G022151' => 'ghi', 'Gohir.D04G171500' => 'ghi', 'Gohir.D05G186750' => 'ghi', 'Gohir.D08G057200' => 'ghi', 'Gohir.D11G057900' => 'ghi', 'Gohir.D11G142700' => 'ghi', 'Gohir.D12G092700' => 'ghi', 'Gorai.002G047400' => 'gra', 'Gorai.002G121600' => 'gra', 'Gorai.002G140000' => 'gra', 'Gorai.002G206900' => 'gra', 'Gorai.003G023400' => 'gra', 'Gorai.004G058400' => 'gra', 'Gorai.007G063100' => 'gra', 'Gorai.007G153000' => 'gra', 'Gorai.008G100300' => 'gra', 'Gorai.009G192000' => 'gra', 'Gorai.010G001700' => 'gra', 'Gorai.012G160400' => 'gra', 'Gorai.013G106200' => 'gra', 'GSVIVG01008758001' => 'vvi', 'GSVIVG01022283001' => 'vvi', 'GSVIVG01028565001' => 'vvi', 'GSVIVG01034556001' => 'vvi', 'HanXRQChr02g0050851' => 'han', 'HanXRQChr04g0107801' => 'han', 'HanXRQChr04g0110671' => 'han', 'HanXRQChr06g0184521' => 'han', 'HanXRQChr10g0287291' => 'han', 'HanXRQChr12g0366771' => 'han', 'HanXRQChr13g0386981' => 'han', 'HanXRQChr14g0429411' => 'han', 'HanXRQChr14g0429421' => 'han', 'Haze_17785' => 'cav', 'Haze_22687' => 'cav', 'Haze_22688' => 'cav', 'Haze_22689' => 'cav', 'Haze_24778' => 'cav', 'Hma1.2p1_0023F.1_g015750' => 'hma', 'Hma1.2p1_0240F.1_g100400' => 'hma', 'Hma1.2p1_0691F.1_g204150' => 'hma', 'Hma1.2p1_1061F.1_g253360' => 'hma', 'HPP92_003483' => 'vpl', 'HPP92_007937' => 'vpl', 'HPP92_008342' => 'vpl', 'HPP92_009607' => 'vpl', 'HPP92_022179' => 'vpl', 'HPP92_022199' => 'vpl', 'HPP92_022203' => 'vpl', 'HPP92_024833' => 'vpl', 'HPP92_025437' => 'vpl', 'HPP92_026627' => 'vpl', 'HPP92_026881' => 'vpl', 'HPP92_028072' => 'vpl', 'Hund01706' => 'sun', 'Hund05157' => 'sun', 'Hund05158' => 'sun', 'Hund05161' => 'sun', 'Hund05162' => 'sun', 'Hund05520' => 'sun', 'Hund18360' => 'sun', 'Hund19620' => 'sun', 'Hund29793' => 'sun', 'Hund29796' => 'sun', 'Lalb_Chr01g0008501' => 'lal', 'Lalb_Chr01g0022441' => 'lal', 'Lalb_Chr03g0033541' => 'lal', 'Lalb_Chr03g0040041' => 'lal', 'Lalb_Chr03g0040051' => 'lal', 'Lalb_Chr03g0041881' => 'lal', 'Lalb_Chr11g0061781' => 'lal', 'Lalb_Chr11g0068201' => 'lal', 'Lalb_Chr19g0125511' => 'lal', 'Lalb_Chr19g0131541' => 'lal', 'Lalb_Chr23g0272451' => 'lal', 'Lj1A83T29' => 'lonja', 'Lj1g0000408' => 'lja', 'Lj1g0003310' => 'lja', 'Lj1g0008438' => 'lja', 'Lj2g0002110' => 'lja', 'Lj4A18T108' => 'lonja', 'Lj4A18T109' => 'lonja', 'Lj4A18T110' => 'lonja', 'Lj4A800T39' => 'lonja', 'Lj5g0015239' => 'lja', 'Lsat_1_v5_gn_2_7301' => 'lsa', 'Lsat_1_v5_gn_2_7381' => 'lsa', 'Lsat_1_v5_gn_4_73960' => 'lsa', 'Lsat_1_v5_gn_5_36040' => 'lsa', 'Lsat_1_v5_gn_6_100761' => 'lsa', 'Lsat_1_v5_gn_7_24401' => 'lsa', 'Lsat_1_v5_gn_8_29520' => 'lsa', 'Lsat_1_v5_gn_8_90121' => 'lsa', 'Lsat_1_v5_gn_9_12540' => 'lsa', 'Manes.05G143600' => 'mes', 'Manes.05G143700' => 'mes', 'Manes.07G012500' => 'mes', 'Manes.12G041800' => 'mes', 'Manes.12G146300' => 'mes', 'Manes.13G044400' => 'mes', 'Manes.15G185150' => 'mes', 'Manes.18G010102' => 'mes', 'Mapoly0007s0249' => 'mpo', 'Mapoly0103s0033' => 'mpo', 'MBI05_g08641_MAGBIO' => 'mbi', 'MBI05_g19938_MAGBIO' => 'mbi', 'MBI05_g36763_MAGBIO' => 'mbi', 'MBI05_g47803_MAGBIO' => 'mbi', 'MBI08_g30369_MAGBIO' => 'mbi', 'MBI10_g24226_MAGBIO' => 'mbi', 'MBI10_g33986_MAGBIO' => 'mbi', 'MBI14_g17869_MAGBIO' => 'mbi', 'MBI15_g41001_MAGBIO' => 'mbi', 'MBI17_g35944_MAGBIO' => 'mbi', 'MBI17_g44404_MAGBIO' => 'mbi', 'MBI17_g44950_MAGBIO' => 'mbi', 'MCO07G369' => 'mco', 'MD01G1009700' => 'mdo', 'MD05G1178300' => 'mdo', 'MD08G1008700' => 'mdo', 'MD08G1008800' => 'mdo', 'MD10G1166400' => 'mdo', 'MD15G1007500' => 'mdo', 'MD15G1007600' => 'mdo', 'MD15G1340000' => 'mdo', 'Medtr0332s0020' => 'mtr', 'Medtr3g095240' => 'mtr', 'Medtr3g095250' => 'mtr', 'Medtr3g095260' => 'mtr', 'Medtr7g059030' => 'mtr', 'MELO3C003733.2' => 'cme', 'MELO3C008020.2' => 'cme', 'MELO3C011351.2' => 'cme', 'MELO3C018064.2' => 'cme', 'MELO3C026701.2' => 'cme', 'Migut.C00889' => 'egut', 'Migut.C00891' => 'egut', 'Migut.D00521' => 'egut', 'Migut.N02260' => 'egut', 'Migut.N03184' => 'egut', 'MSTRG.1154' => 'ama', 'MSTRG.1155' => 'ama', 'MSTRG.17546' => 'ama', 'MSTRG.22353' => 'ama', 'MSTRG.25271' => 'ama', 'MSTRG.25272' => 'ama', 'Nitab4.5_0000306g0040' => 'nta', 'Nitab4.5_0000498g0060' => 'nta', 'Nitab4.5_0000866g0030' => 'nta', 'Nitab4.5_0001936g0050' => 'nta', 'Nitab4.5_0001936g0060' => 'nta', 'Nitab4.5_0002085g0040' => 'nta', 'Nitab4.5_0002730g0020' => 'nta', 'Nitab4.5_0002730g0060' => 'nta', 'Nitab4.5_0003790g0060' => 'nta', 'Nitab4.5_0004361g0060' => 'nta', 'Nitab4.5_0004371g0020' => 'nta', 'Nitab4.5_0004881g0050' => 'nta', 'Nitab4.5_0006773g0020' => 'nta', 'Nitab4.5_0010135g0010' => 'nta', 'Nn1g06050' => 'nnu', 'Nn1g07781' => 'nnu', 'Nn3g19920' => 'nnu', 'Nn5g28790' => 'nnu', 'Nn5g30828' => 'nnu', 'Nn6g31933' => 'nnu', 'Nn6g31936' => 'nnu', 'Oeu007376.2' => 'oeu', 'Oeu015905.1' => 'oeu', 'Oeu018504.1' => 'oeu', 'Oeu024036.1' => 'oeu', 'Oeu026125.1' => 'oeu', 'Oeu026861.1' => 'oeu', 'Oeu035792.2' => 'oeu', 'Oeu048720.1' => 'oeu', 'Oeu048721.1' => 'oeu', 'Oeu051148.1' => 'oeu', 'Os03g0166000' => 'osa', 'Os03g0735300' => 'osa', 'Os04g0227500' => 'osa', 'Os04g0428950' => 'osa', 'Os09g0542000' => 'osa', 'Os09g0542200' => 'osa', 'Os11g0168300' => 'osa', 'Peaxi162Scf00047g01031' => 'pax', 'Peaxi162Scf00064g00828' => 'pax', 'Peaxi162Scf00107g00211' => 'pax', 'Peaxi162Scf00289g00084' => 'pax', 'Peaxi162Scf00289g00118' => 'pax', 'Peaxi162Scf00517g00043' => 'pax', 'Peaxi162Scf00860g00017' => 'pax', 'PGR031G2145' => 'pgr', 'PGR041G0003' => 'pgr', 'PGR058G0001' => 'pgr', 'PGR083G1601' => 'pgr', 'PGR083G1641' => 'pgr', 'PGR083G1908' => 'pgr', 'PGSC0003DMG400003423' => 'stu', 'PGSC0003DMG400006363' => 'stu', 'PGSC0003DMG400009952' => 'stu', 'PGSC0003DMG400029329' => 'stu', 'PGSC0003DMG400029627' => 'stu', 'PGSC0003DMG401020090' => 'stu', 'Phvul.001G003500' => 'pvu', 'Phvul.008G123500' => 'pvu', 'Phvul.009G019200' => 'pvu', 'Phvul.009G146600' => 'pvu', 'Potri.002G017500' => 'ptr', 'Potri.002G017600' => 'ptr', 'Potri.002G066100' => 'ptr', 'Potri.002G240601' => 'ptr', 'Potri.005G194600' => 'ptr', 'Potri.005G244300' => 'ptr', 'Potri.005G244400' => 'ptr', 'Pp3c20_14330' => 'ppa', 'Pp3c23_11410' => 'ppa', 'Pp3c23_8810' => 'ppa', 'Pp3c24_4680' => 'ppa', 'Prupe.1G360400' => 'ppe', 'Prupe.1G360500' => 'ppe', 'Prupe.6G161100' => 'ppe', 'Prupe.8G036600' => 'ppe', 'Prupe.8G204800' => 'ppe', 'Psat3g143840' => 'psa', 'Psat5g064200' => 'psa', 'Psat5g064240' => 'psa', 'Psat7g082200' => 'psa', 'Psat7g082240' => 'psa', 'PSO063G0231' => 'pso', 'PSO170G6000' => 'pso', 'PSO541G2356' => 'pso', 'PSO541G4735' => 'pso', 'PSO675G3986' => 'pso', 'PSO675G9289' => 'pso', 'PSO700G0178' => 'pso', 'PSO782G4846' => 'pso', 'QL02p012627' => 'qlo', 'QL02p012636' => 'qlo', 'QL02p037775' => 'qlo', 'QL02p038751' => 'qlo', 'QL06p031230' => 'qlo', 'RcHm_v2.0_Chr2g0119911' => 'rch', 'RcHm_v2.0_Chr6g0266401' => 'rch', 'RcHm_v2.0_Chr6g0274731' => 'rch', 'RcHm_v2.0_Chr6g0279221' => 'rch', 'RcHm_v2.0_Chr6g0285131' => 'rch', 'RcHm_v2.0_Chr6g0303561' => 'rch', 'RcHm_v2.0_Chr6g0303571' => 'rch', 'Rhsim01G0257500' => 'rsi', 'Rhsim06G0013400' => 'rsi', 'Rhsim06G0013500' => 'rsi', 'Rhsim07G0249200' => 'rsi', 'Rhsim07G0249300' => 'rsi', 'Rhsim07G0249400' => 'rsi', 'Rhsim13G0044100' => 'rsi', 'Sabra02G0014000' => 'sbr', 'Sabra02G0183200' => 'sbr', 'Sabra05G0148100' => 'sbr', 'Sabra05G0188900' => 'sbr', 'Sabra05G0189000' => 'sbr', 'SalBow6G2271' => 'sbo', 'SalBow7G4280' => 'sbo', 'Sc02g0008780' => 'sci', 'Sc15g0004710' => 'sci', 'Sc17g0002570' => 'sci', 'Sed0001977' => 'sed', 'Sed0003465' => 'sed', 'Sed0006708' => 'sed', 'Sed0009615' => 'sed', 'Sed0010689' => 'sed', 'Sed0012420' => 'sed', 'Sed0014345' => 'sed', 'Sed0015100' => 'sed', 'Sed0024927' => 'sed', 'Sed0027493' => 'sed', 'SEGI_05776' => 'sgi', 'SEGI_13101' => 'sgi', 'SEGI_16757' => 'sgi', 'SEGI_34166' => 'sgi', 'SEGI_40940' => 'sgi', 'SGA_v2.0_scaffold145G36085' => 'sas', 'SGA_v2.0_scaffold145G36086' => 'sas', 'SGA_v2.0_scaffold19G08579' => 'sas', 'SGA_v2.0_scaffold292G47380' => 'sas', 'SGA_v2.0_scaffold292G47381' => 'sas', 'SGA_v2.0_scaffold3G01579' => 'sas', 'SGA_v2.0_scaffold42G16149' => 'sas', 'SHI08015' => 'shi', 'SHI28651' => 'shi', 'SHI28653' => 'shi', 'SMO134G0143' => 'smo', 'SMO137G0357' => 'smo', 'SMO169G0052' => 'smo', 'SMO364G0269' => 'smo', 'Solyc04g071690.4' => 'sly', 'Solyc04g081880.4' => 'sly', 'Solyc06g083540.4' => 'sly', 'Solyc09g061710.3' => 'sly', 'Solyc09g091590.3' => 'sly', 'Solyc12g094380.2' => 'sly', 'Sopen04g027670' => 'spe', 'Sopen04g035510' => 'spe', 'Sopen06g034920' => 'spe', 'Sopen09g024700' => 'spe', 'Sopen09g034510' => 'spe', 'Sopen12g031250' => 'spe', 'Sopen12g031260' => 'spe', 'Sp1g17980' => 'spa', 'Sp1g17990' => 'spa', 'Sp3g05970' => 'spa', 'Sp5g31120' => 'spa', 'Sp5g31130' => 'spa', 'TAR362G0154' => 'tar', 'TAR369G0870' => 'tar', 'TAR376G0124' => 'tar', 'TAR381G0201' => 'tar', 'TAR381G0693' => 'tar', 'TAR628G1645' => 'tar', 'TAR633G0956' => 'tar', 'TAR636G3634' => 'tar', 'THA.LOC104809595' => 'tha', 'THA.LOC104811437' => 'tha', 'THA.LOC104813222' => 'tha', 'THA.LOC104813773' => 'tha', 'THA.LOC104818946' => 'tha', 'THA.LOC104827352' => 'tha', 'Thecc.01G118200' => 'tca', 'Thecc.01G228000' => 'tca', 'Thecc.02G042100' => 'tca', 'Thecc.04G209600' => 'tca', 'Thecc.08G049800' => 'tca', 'Thecc.08G049900' => 'tca', 'Thecc.08G050000' => 'tca', 'Thhalv10008163m.g' => 'esa', 'Thhalv10010046m.g' => 'esa', 'Thhalv10019591m.g' => 'esa', 'Thhalv10022442m.g' => 'esa', 'TPR.G15279' => 'tpr', 'TPR.G18730' => 'tpr', 'TPR.G18735' => 'tpr', 'TPR.G36157' => 'tpr', 'TPR.G9568' => 'tpr', 'TWI12G1160' => 'twi', 'TWI18G0777' => 'twi', 'TWI34G1358' => 'twi', 'TWI36G1559' => 'twi', 'TWI56G0802' => 'twi', 'TWI56G1262' => 'twi', 'TWI60G0719' => 'twi', 'TWI75G0028' => 'twi', 'unitig_32.g11240' => 'ugi', 'unitig_46.g18036' => 'ugi', 'unitig_82.g27111' => 'ugi', 'unitig_85.g27277' => 'ugi', 'vmacro01480' => 'vma', 'vmacro02747' => 'vma', 'vmacro04375' => 'vma', 'vmacro04376' => 'vma', 'vmacro14765' => 'vma', 'vmacro21856' => 'vma', 'vmacro21857' => 'vma', 'VMungo0647G1197' => 'vmu', 'VMungo1309G1274' => 'vmu', 'Zm00001eb015640' => 'zma', 'Zm00001eb039060' => 'zma', 'Zm00001eb056360' => 'zma', 'Zm00001eb082970' => 'zma', 'Zm00001eb091850' => 'zma', 'Zm00001eb103890' => 'zma', 'Zm00001eb103900' => 'zma', 'Zm00001eb131670' => 'zma', 'Zm00001eb139040' => 'zma', 'Zm00001eb158580' => 'zma', 'Zm00001eb170810' => 'zma', 'Zm00001eb215420' => 'zma', 'Zm00001eb225310' => 'zma', 'Zm00001eb239470' => 'zma', 'Zm00001eb254890' => 'zma', 'Zm00001eb269380' => 'zma', 'Zm00001eb277680' => 'zma', 'Zm00001eb344510' => 'zma', 'Zm00001eb403460' => 'zma', 'Zm00001eb413980' => 'zma', 'Zm00001eb419520' => 'zma', 'Zm00001eb424880' => 'zma' ) $gf_id = 'HOM05D000901' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000901' ) $data_identifier = 'HOM05D000901' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 14, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 13, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 10, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 10, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 7, 'vmu' => (int) 2, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424880' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1